Source: ALL

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs9939609
rs9939609
FTO
0.559 0.720 16 53786615 intron variant T/A snv 0.41
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 1.000 2 2014 2017
dbSNP: rs9905742
rs9905742
MYBBP1A
1.000 0.080 17 4539780 missense variant T/A snv 3.0E-02 2.7E-02
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 < 0.001 1 2016 2016
dbSNP: rs9376268
rs9376268
IFNGR1
0.925 0.080 6 137211614 intron variant G/A snv 0.20
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs9376267
rs9376267
IFNGR1
0.925 0.080 6 137209894 5 prime UTR variant C/T snv 0.22
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs9272785
rs9272785
HLA-DQA1 ; HLA-DQA2 ; LOC107986589
0.882 0.080 6 32642624 missense variant G/A snv 0.18 8.7E-02
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2016 2016
dbSNP: rs9272461
rs9272461
HLA-DQA1 ; HLA-DQA2 ; LOC107986589
1.000 0.080 6 32637832 intron variant G/A snv 0.13
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2018 2018
dbSNP: rs9271300
rs9271300 		1.000 0.080 6 32613805 intergenic variant C/G snv 0.54
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2018 2018
dbSNP: rs9061
rs9061
SP110 ; SP140
0.925 0.080 2 230212395 missense variant C/T snv 0.11 9.1E-02
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 < 0.001 1 2016 2016
dbSNP: rs897200
rs897200
STAT4
0.851 0.280 2 191153045 upstream gene variant T/C snv 0.54
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 1.000 2 2014 2018
dbSNP: rs8193036
rs8193036
IL17A
0.689 0.600 6 52185695 upstream gene variant C/T snv 0.72
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 < 0.001 1 2016 2016
dbSNP: rs8177374
rs8177374
TIRAP
0.672 0.520 11 126292948 missense variant C/T snv 0.12 0.11
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.030 1.000 3 2010 2014
dbSNP: rs8050136
rs8050136
FTO
0.716 0.560 16 53782363 intron variant C/A snv 0.40
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs7975232
rs7975232
VDR
0.576 0.760 12 47845054 intron variant C/A snv 0.51 0.55
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2019 2019
dbSNP: rs7958311
rs7958311
P2RX7 ; LOC105370032
0.851 0.160 12 121167552 missense variant G/A;C snv 0.25; 4.0E-06
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2016 2016
dbSNP: rs7873784
rs7873784
TLR4
0.752 0.440 9 117716658 3 prime UTR variant G/A;C;T snv
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2015 2015
dbSNP: rs779826162
rs779826162
TLR1
0.925 0.080 4 38796574 missense variant C/T snv 2.0E-05 1.4E-05
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 1.000 2 2010 2010
dbSNP: rs7749390
rs7749390
IFNGR1
0.882 0.120 6 137219233 5 prime UTR variant A/G;T snv 0.43; 4.4E-06
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs763780
rs763780
IL17F
0.531 0.720 6 52236941 missense variant T/C snv 6.7E-02 6.6E-02
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2013 2013
dbSNP: rs763059810
rs763059810
CXCR4
0.623 0.600 2 136115750 missense variant T/C snv 4.0E-06
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2009 2009
dbSNP: rs7518660
rs7518660
IL23R ; C1orf141
0.925 0.120 1 67219760 intron variant G/A snv 0.43 0.47
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2015 2015
dbSNP: rs731236
rs731236
VDR
0.542 0.760 12 47844974 synonymous variant A/G snv 0.33 0.34
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2019 2019
dbSNP: rs722555
rs722555
SP110
1.000 0.080 2 230168800 non coding transcript exon variant C/T snv 0.57
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 < 0.001 1 2017 2017
dbSNP: rs7194886
rs7194886 		0.851 0.080 16 50691282 upstream gene variant C/T snv 0.38
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2012 2012
dbSNP: rs7096206
rs7096206
MBL2
0.708 0.480 10 52771925 upstream gene variant G/A;C;T snv
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 0.500 2 2014 2019
dbSNP: rs7095891
rs7095891
MBL2
0.882 0.120 10 52771701 upstream gene variant G/A snv 0.30
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 1.000 2 2019 2019